{
  "_id": "6a1035ccacfb0bcc41c99c60",
  "Package": "tna",
  "Title": "Transition Network Analysis (TNA)",
  "Version": "1.2.3",
  "Authors@R": "c(\nperson(\"Mohammed\", \"Saqr\", role = \"aut\"),\nperson(\"Santtu\", \"Tikka\", role = \"aut\"),\nperson(\"Sonsoles\", \"L\\u00f3pez-Pernas\",\nemail = \"sonsoles.lopez@uef.fi\", role = c(\"aut\", \"cre\", \"cph\"))\n)",
  "Description": "Provides tools for performing Transition Network Analysis\n(TNA) to study relational dynamics, including functions for\nbuilding and plotting TNA models, calculating centrality\nmeasures, and identifying dominant events and patterns. TNA\nstatistical techniques (e.g., bootstrapping and permutation\ntests) ensure the reliability of observed insights and confirm\nthat identified dynamics are meaningful. See (Saqr et al.,\n2025) <doi:10.1145/3706468.3706513> for more details on TNA.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/sonsoleslp/tna/, https://sonsoles.me/tna/",
  "BugReports": "https://github.com/sonsoleslp/tna/issues/",
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  "Config/pak/sysreqs": "libglpk-dev libicu-dev libxml2-dev",
  "Repository": "https://sonsoleslp.r-universe.dev",
  "Date/Publication": "2026-04-26 13:58:36 UTC",
  "RemoteUrl": "https://github.com/sonsoleslp/tna",
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  "NeedsCompilation": "no",
  "Packaged": {
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    "User": "root"
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  "Author": "Mohammed Saqr [aut],\nSanttu Tikka [aut],\nSonsoles López-Pernas [aut, cre, cph]",
  "Maintainer": "Sonsoles López-Pernas <sonsoles.lopez@uef.fi>",
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  "_created": "2026-05-22T10:49:31.000Z",
  "_published": "2026-05-22T10:54:04.541Z",
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    "learning-analytics",
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    "atna",
    "betweenness_network",
    "bootstrap",
    "bootstrap_cliques",
    "build_model",
    "centralities",
    "cliques",
    "cluster_data",
    "cluster_sequences",
    "communities",
    "compare",
    "compare_sequences",
    "ctna",
    "deprune",
    "estimate_centrality_stability",
    "estimate_cs",
    "ftna",
    "group_atna",
    "group_ctna",
    "group_ftna",
    "group_model",
    "group_tna",
    "import_data",
    "import_onehot",
    "list_random_state_pools",
    "mmm_stats",
    "permutation_test",
    "plot_associations",
    "plot_compare",
    "plot_frequencies",
    "plot_model",
    "plot_mosaic",
    "plot_sequences",
    "prepare_data",
    "prune",
    "pruning_details",
    "random_group_tna",
    "random_tna",
    "random_tna_mmm",
    "reliability",
    "rename_groups",
    "reprune",
    "simulate",
    "sna",
    "tna",
    "tsn"
  ],
  "_datasets": [
    {
      "name": "engagement",
      "title": "Example Data on Student Engagement",
      "object": "engagement",
      "class": [
        "stslist",
        "data.frame"
      ],
      "fields": [
        "T1",
        "T2",
        "T3",
        "T4",
        "T5",
        "T6",
        "T7",
        "T8",
        "T9",
        "T10",
        "T11",
        "T12",
        "T13",
        "T14",
        "T15",
        "T16",
        "T17",
        "T18",
        "T19",
        "T20",
        "T21",
        "T22",
        "T23",
        "T24",
        "T25"
      ],
      "rows": 1000,
      "table": true,
      "tojson": true
    },
    {
      "name": "engagement_mmm",
      "title": "Example Mixture Markov Model Object for the 'engagement' Data",
      "object": "engagement_mmm",
      "class": [
        "tna_mmm"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "group_regulation",
      "title": "Example Wide Data on Group Regulation",
      "object": "group_regulation",
      "class": [
        "data.frame"
      ],
      "fields": [
        "T1",
        "T2",
        "T3",
        "T4",
        "T5",
        "T6",
        "T7",
        "T8",
        "T9",
        "T10",
        "T11",
        "T12",
        "T13",
        "T14",
        "T15",
        "T16",
        "T17",
        "T18",
        "T19",
        "T20",
        "T21",
        "T22",
        "T23",
        "T24",
        "T25",
        "T26"
      ],
      "rows": 2000,
      "table": true,
      "tojson": true
    },
    {
      "name": "group_regulation_long",
      "title": "Example Long Data on Group Regulation",
      "object": "group_regulation_long",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "Actor",
        "Achiever",
        "Group",
        "Course",
        "Time",
        "Action"
      ],
      "rows": 27533,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "tna-package",
      "title": "The 'tna' Package.",
      "concept": [
        "basic"
      ],
      "topics": [
        "tna-package"
      ]
    },
    {
      "page": "as.igraph.group_tna",
      "title": "Coerce a Specific Group from a 'group_tna' Object into an 'igraph' Object.",
      "concept": [
        "helpers"
      ],
      "topics": [
        "as.igraph.group_tna"
      ]
    },
    {
      "page": "as.igraph.matrix",
      "title": "Coerce a Weight Matrix into an 'igraph' Object.",
      "concept": [
        "helpers"
      ],
      "topics": [
        "as.igraph.matrix"
      ]
    },
    {
      "page": "as.igraph.tna",
      "title": "Coerce a 'tna' Object into an 'igraph' Object.",
      "concept": [
        "helpers"
      ],
      "topics": [
        "as.igraph.tna"
      ]
    },
    {
      "page": "betweenness_network",
      "title": "Build and Visualize a Network with Edge Betweenness",
      "concept": [
        "centralities"
      ],
      "topics": [
        "betweenness_network",
        "betweenness_network.tna"
      ]
    },
    {
      "page": "bootstrap",
      "title": "Bootstrap Transition Networks from Sequence Data",
      "concept": [
        "validation"
      ],
      "topics": [
        "bootstrap",
        "bootstrap.group_tna",
        "bootstrap.tna"
      ]
    },
    {
      "page": "bootstrap_cliques",
      "title": "Bootstrap Cliques of Transition Networks from Sequence Data",
      "topics": [
        "bootstrap_cliques",
        "bootstrap_cliques.tna"
      ]
    },
    {
      "page": "build_model",
      "title": "Build a Transition Network Analysis Model",
      "concept": [
        "basic"
      ],
      "topics": [
        "atna",
        "build_model",
        "build_model.data.frame",
        "build_model.default",
        "build_model.matrix",
        "build_model.stslist",
        "build_model.tna_data",
        "build_model.tsn",
        "ctna",
        "ftna",
        "tna",
        "tsn"
      ]
    },
    {
      "page": "centralities",
      "title": "Calculate Centrality Measures for a Transition Matrix",
      "concept": [
        "centralities"
      ],
      "topics": [
        "centralities",
        "centralities.group_tna",
        "centralities.matrix",
        "centralities.tna"
      ]
    },
    {
      "page": "cliques",
      "title": "Identify Cliques in a Transition Network",
      "concept": [
        "cliques"
      ],
      "topics": [
        "cliques",
        "cliques.group_tna",
        "cliques.tna"
      ]
    },
    {
      "page": "cluster_data",
      "title": "Clustering via Dissimilarity Matrix based on String Distances",
      "topics": [
        "cluster_data",
        "cluster_sequences"
      ]
    },
    {
      "page": "communities",
      "title": "Community Detection for Transition Networks",
      "concept": [
        "clusters",
        "communities"
      ],
      "topics": [
        "communities",
        "communities.group_tna",
        "communities.tna"
      ]
    },
    {
      "page": "compare",
      "title": "Compare Two Matrices or TNA Models with Comprehensive Metrics",
      "concept": [
        "comparison"
      ],
      "topics": [
        "compare",
        "compare.matrix",
        "compare.tna"
      ]
    },
    {
      "page": "compare_sequences",
      "title": "Compare Sequences Between Groups",
      "concept": [
        "comparison"
      ],
      "topics": [
        "compare_sequences",
        "compare_sequences.default",
        "compare_sequences.group_tna"
      ]
    },
    {
      "page": "compare.group_tna",
      "title": "Compare Grouped TNA Models with Comprehensive Metrics",
      "concept": [
        "comparison"
      ],
      "topics": [
        "compare.group_tna"
      ]
    },
    {
      "page": "deprune",
      "title": "Restore a Pruned Transition Network Analysis Model",
      "concept": [
        "validation"
      ],
      "topics": [
        "deprune",
        "deprune.group_tna",
        "deprune.tna",
        "reprune.tna"
      ]
    },
    {
      "page": "engagement",
      "title": "Example Data on Student Engagement",
      "concept": [
        "datasets"
      ],
      "topics": [
        "engagement"
      ]
    },
    {
      "page": "engagement_mmm",
      "title": "Example Mixture Markov Model Object for the 'engagement' Data",
      "concept": [
        "datasets"
      ],
      "topics": [
        "engagement_mmm"
      ]
    },
    {
      "page": "estimate_centrality_stability",
      "title": "Estimate Centrality Stability",
      "concept": [
        "validation"
      ],
      "topics": [
        "estimate_centrality_stability",
        "estimate_centrality_stability.group_tna",
        "estimate_centrality_stability.tna",
        "estimate_cs",
        "estimate_cs.group_tna",
        "estimate_cs.tna"
      ]
    },
    {
      "page": "group_model",
      "title": "Build a Grouped Transition Network Analysis Model",
      "concept": [
        "clusters"
      ],
      "topics": [
        "group_atna",
        "group_ctna",
        "group_ftna",
        "group_model",
        "group_model.default",
        "group_model.mhmm",
        "group_model.tna_clustering",
        "group_model.tna_mmm",
        "group_tna"
      ]
    },
    {
      "page": "group_regulation",
      "title": "Example Wide Data on Group Regulation",
      "concept": [
        "datasets"
      ],
      "topics": [
        "group_regulation"
      ]
    },
    {
      "page": "group_regulation_long",
      "title": "Example Long Data on Group Regulation",
      "concept": [
        "datasets"
      ],
      "topics": [
        "group_regulation_long"
      ]
    },
    {
      "page": "hist.group_tna",
      "title": "Plot a Histogram of Edge Weights for a 'group_tna' Object.",
      "concept": [
        "basic"
      ],
      "topics": [
        "hist.group_tna"
      ]
    },
    {
      "page": "hist.tna",
      "title": "Plot a Histogram of Edge Weights in the Network",
      "concept": [
        "basic"
      ],
      "topics": [
        "hist.tna"
      ]
    },
    {
      "page": "import_data",
      "title": "Import Wide Format Sequence Data as Long Format Sequence Data",
      "concept": [
        "data"
      ],
      "topics": [
        "import_data"
      ]
    },
    {
      "page": "import_onehot",
      "title": "Import One-Hot Data",
      "concept": [
        "data"
      ],
      "topics": [
        "import_onehot"
      ]
    },
    {
      "page": "list_random_state_pools",
      "title": "List Built-in Label Pools for 'random_tna()'",
      "concept": [
        "data"
      ],
      "topics": [
        "list_random_state_pools"
      ]
    },
    {
      "page": "mmm_stats",
      "title": "Retrieve Statistics from a Mixture Markov Model (MMM)",
      "concept": [
        "clusters"
      ],
      "topics": [
        "mmm_stats",
        "mmm_stats.mhmm",
        "mmm_stats.tna_mmm"
      ]
    },
    {
      "page": "permutation_test",
      "title": "Compare Two Networks from Sequence Data using a Permutation Test",
      "concept": [
        "validation"
      ],
      "topics": [
        "permutation_test",
        "permutation_test.tna"
      ]
    },
    {
      "page": "permutation_test.group_tna",
      "title": "Compare Networks using a Permutation Test",
      "concept": [
        "validation"
      ],
      "topics": [
        "permutation_test.group_tna"
      ]
    },
    {
      "page": "plot_associations",
      "title": "Plot an Association Network",
      "topics": [
        "plot_associations",
        "plot_associations.tna"
      ]
    },
    {
      "page": "plot_compare",
      "title": "Plot the Difference Network Between Two Models",
      "concept": [
        "comparison"
      ],
      "topics": [
        "plot_compare",
        "plot_compare.tna"
      ]
    },
    {
      "page": "plot_compare.group_tna",
      "title": "Plot the Difference Network Between Two Groups",
      "concept": [
        "comparison"
      ],
      "topics": [
        "plot_compare.group_tna"
      ]
    },
    {
      "page": "plot_frequencies",
      "title": "Plot the Frequency Distribution of States",
      "concept": [
        "basic"
      ],
      "topics": [
        "plot_frequencies",
        "plot_frequencies.tna"
      ]
    },
    {
      "page": "plot_frequencies.group_tna",
      "title": "Plot the Frequency Distribution of States",
      "concept": [
        "basic"
      ],
      "topics": [
        "plot_frequencies.group_tna"
      ]
    },
    {
      "page": "plot_mosaic",
      "title": "Create a Mosaic Plot of Transitions or Events",
      "concept": [
        "basic"
      ],
      "topics": [
        "plot_mosaic",
        "plot_mosaic.tna"
      ]
    },
    {
      "page": "plot_mosaic.group_tna",
      "title": "Plot State Frequencies as a Mosaic Between Two Groups",
      "concept": [
        "basic"
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      "topics": [
        "plot_mosaic.group_tna"
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    },
    {
      "page": "plot_mosaic.tna_data",
      "title": "Plot State Frequencies as a Mosaic Between Two Groups",
      "concept": [
        "basic"
      ],
      "topics": [
        "plot_mosaic.tna_data"
      ]
    },
    {
      "page": "plot_sequences",
      "title": "Create a Sequence Index Plot or a Distribution Plot",
      "topics": [
        "plot_sequences",
        "plot_sequences.default",
        "plot_sequences.group_tna",
        "plot_sequences.tna",
        "plot_sequences.tna_data"
      ]
    },
    {
      "page": "plot.group_tna",
      "title": "Plot a Grouped Transition Network Analysis Model",
      "concept": [
        "basic"
      ],
      "topics": [
        "plot.group_tna"
      ]
    },
    {
      "page": "plot.group_tna_bootstrap",
      "title": "Plot a Bootstrapped Grouped Transition Network Analysis Model",
      "concept": [
        "validation"
      ],
      "topics": [
        "plot.group_tna_bootstrap"
      ]
    },
    {
      "page": "plot.group_tna_centralities",
      "title": "Plot Centrality Measures",
      "concept": [
        "centralities"
      ],
      "topics": [
        "plot.group_tna_centralities"
      ]
    },
    {
      "page": "plot.group_tna_cliques",
      "title": "Plot Found Cliques",
      "concept": [
        "cliques"
      ],
      "topics": [
        "plot.group_tna_cliques"
      ]
    },
    {
      "page": "plot.group_tna_communities",
      "title": "Plot Detected Communities",
      "concept": [
        "communities"
      ],
      "topics": [
        "plot.group_tna_communities"
      ]
    },
    {
      "page": "plot.group_tna_permutation",
      "title": "Plot Permutation Test Results",
      "concept": [
        "validation"
      ],
      "topics": [
        "plot.group_tna_permutation"
      ]
    },
    {
      "page": "plot.group_tna_stability",
      "title": "Plot Centrality Stability Results",
      "concept": [
        "validation"
      ],
      "topics": [
        "plot.group_tna_stability"
      ]
    },
    {
      "page": "plot.tna",
      "title": "Plot a Transition Network Analysis Model",
      "concept": [
        "basic"
      ],
      "topics": [
        "plot.tna"
      ]
    },
    {
      "page": "plot.tna_bootstrap",
      "title": "Plot a Bootstrapped Transition Network Analysis Model",
      "concept": [
        "validation"
      ],
      "topics": [
        "plot.tna_bootstrap"
      ]
    },
    {
      "page": "plot.tna_centralities",
      "title": "Plot Centrality Measures",
      "concept": [
        "centralities"
      ],
      "topics": [
        "plot.tna_centralities"
      ]
    },
    {
      "page": "plot.tna_cliques",
      "title": "Plot Cliques of a TNA Network",
      "concept": [
        "cliques"
      ],
      "topics": [
        "plot.tna_cliques"
      ]
    },
    {
      "page": "plot.tna_communities",
      "title": "Plot Communities",
      "concept": [
        "communities"
      ],
      "topics": [
        "plot.tna_communities"
      ]
    },
    {
      "page": "plot.tna_comparison",
      "title": "Plot the Comparison of Two TNA Models or Matrices",
      "concept": [
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      ],
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    },
    {
      "page": "plot.tna_permutation",
      "title": "Plot the Significant Differences from a Permutation Test",
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      "page": "plot.tna_reliability",
      "title": "Plot Reliability Analysis Results",
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        "validation"
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      "title": "Plot a Sequence Comparison",
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      "title": "Plot Centrality Stability Results",
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      "title": "Print a 'group_tna' Object",
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      "title": "Print 'group_tna' Bootstrap Results",
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      "page": "print.group_tna_communities",
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      "page": "print.group_tna_permutation",
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      "title": "Print a TNA Summary",
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      "page": "print.summary.tna_bootstrap",
      "title": "Print a Bootstrap Summary",
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      "title": "Print a 'tna' Object",
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      "title": "Print Found Cliques of a TNA Network",
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      "title": "Print Comparison Results",
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      "title": "Print Permutation Test Results",
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      "title": "Print Reliability Analysis Results",
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      "page": "print.tna_sequence_comparison",
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      "page": "pruning_details",
      "title": "Print Detailed Information on the Pruning Results",
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      "title": "Rename Groups",
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